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Linear B-Cell Epitopes

Identification of B-cell epitopes is a fundamental step for the development of epitope-based vaccines, therapeutic antibodies, and diagnostic tools. Creative Biolabs offers a comprehensive range of B-cell epitopes mapping services to accelerate the customer's project progress.

What is a B Cell Epitope?

Antigen-antibody interaction is a key event in the humoral immune response. In this process, specific antibodies recognize antigens at discrete regions known as antigenic determinants or B-cell epitopes. B-cell epitopes can be defined as a surface accessible clusters of amino acids, which are recognized by secreted antibodies or B-cell receptors and are capable of eliciting a cellular or humoral immune response. Based on the spatial structure of the B-cell epitopes, it can be divided into two groups: linear (continuous or sequential) and conformational (nonlinear or discontinuous) epitopes. Linear epitopes are formed by linear stretch residues in the antigenic protein sequence and typically vary from 5 to 20 amino acids in length. In contrast, conformational epitopes are formed by residues that are far apart in the antigen sequence, and these residues are brought together in space by their folding. Although the majority of epitopes are conformational, most of them are composed of 1-5 linear stretches. Linear B-cell epitope has vast application in the area of antibody production, immunodiagnostics; epitope-based vaccine design, selective deimmunization of therapeutic proteins and autoimmunity.

B cell epitope. Fig.1 B cell epitope.

Linear B-Cell Epitopes Mapping

B cell epitope identification is essential for the development of vaccines and the selection of high-affinity antibodies for immunotherapy and immunodiagnostics. Currently, some reliable B cell epitope mapping tools have been applied to many clinical and biotechnology research, such as vaccine design and therapeutic antibody development. Experimental methods developed to identify epitopes can be broadly classified into structural and functional studies.

The most accurate method for structural epitope mapping is X-ray crystallography of antigen-antibody (Ag-Ab) complexes, and this method is generally considered to be the only way to define structural epitopes and is a guarantee for the precise identification of linear and conformational epitopes. Bacterial or viral antigens, especially small soluble proteins, are ideal for crystallography. However, there are some limitations in the application of X-ray crystallography, such as being limited by the quality of cocrystals and electron density of the antibody. In recent years, other methods, including nuclear magnetic resonance (NMR) and electron microscopy (EM), have been used to replace traditional X-ray crystallography. NMR shows several advantages over X-ray crystallography, such as providing data on the structure, kinetics, and binding energy of the Ag-Ab complex, and being able to perform in solutions where no crystals are needed. It should be noted hat NMR is limited to small proteins and peptides (<25 kDa). EM can also be used for epitope mapping, and it is a low-resolution structural approach for larger antigens (e.g., whole viral particles).

Most B cell epitope mapping experiments make use of linear peptide fragments from antigenic proteins. These peptides can be homologous enough to parts of the whole antigen to allow for antibody binding. Some of the commonly used methods for functional B-cell epitope mapping are screening of antigen-derived proteolytic fragments or peptides for antibody binding and testing the Ag-Ab reactivity of mutants (site-directed or randomly mutated). Other techniques, such as display technologies and mimotope analysis have also become acceptable alternative choices for epitope mapping because of their relative cost, flexibility, and speed.

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Creative Biolabs' experts can provide customized solutions according to your project needs. Our unique solutions for immunology research can save you time, money and risk, whether your objective is basic research, preclinical or clinical development. Please contact us for more details.


All listed services and products are For Research Use Only. Do Not use in any diagnostic or therapeutic applications.

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