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CLN3

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All listed services and products are For Research Use Only. Do Not use in any diagnostic or therapeutic applications.

Background

CLN3 (battenin) is a multi-pass endolysosomal transmembrane protein encoded by CLN3 gene, widely expressed in central nervous system neurons and epithelial tissues, forming lipid-permeable transmembrane pores to export undigested fatty acid and lipopigment intermediates out of lysosomal lumens. Pathogenic loss-of-function CLN3 mutations block lipid efflux and lead to massive lipofuscin pigment accumulation within neuronal lysosomes, which is the primary pathological driver of juvenile neuronal ceroid lipofuscinosis (Batten disease).

CLN3 exerts lipid homeostatic effects via conserved transmembrane helices that assemble into small lipid efflux channels, transporting hydrophobic degradative waste across the lysosomal limiting membrane into cytoplasmic clearance pathways. Unlike other lysosomal transporters with narrow substrate spectra, CLN3 mediates broad-spectrum efflux of diverse lipopigment precursors; loss of channel activity traps lipid aggregates inside degradative organelles, uncoupling lysosomal lipid breakdown from cellular waste elimination. This regulatory balance sustains neuronal survival under physiological conditions, while CLN3 truncation or missense mutations trigger progressive neurodegeneration. CLN3 participates in lysosomal lipid turnover, neuronal homeostasis and inherited childhood neurodegenerative storage disorders, making it a pivotal research marker for lipodystrophy and neurolysosomal disease study.

Fig. 1 Global intracellular trafficking network governed by lysosomal transmembrane protein CLN3. (OA Literature)Fig. 1 CLN3 (marked by red asterisks) distributes across cis-Golgi, transport vesicles, endosomes and lysosomes; it regulates retrograde trafficking, autophagolysosome maturation, and cytoskeleton-coupled delivery of signaling molecules to neuronal plasma membrane.1

CLN3 Protein Function: Core Roles in Lysosomal Lipid Homeostasis and Neuronal Protection

The biological functions of CLN3 are focused on endolysosomal lipid transmembrane efflux channel formation:

  • Lysosomal Lipid Transporter Modulation: Assembles multi-pass lipid efflux pores across lysosomal membranes, the primary molecular mechanism of CLN3-mediated regulation.
  • Lipofuscin Clearance Control: Exports undigested lipopigment precursors to prevent intralysosomal aggregate buildup, fine-tuning neuronal lipid balance.
  • Neuronal Survival Maintenance: Reduces toxic lipopigment accumulation in central nerve tissue.
  • Endolysosome Function Stabilization: Preserves normal degradative compartment physiological environment.
  • Disease Relevance: CLN3 loss-of-function mutations trigger juvenile Batten neurodegenerative disease, a core neurolysosomal target.

CLN3 Protein Product

Creative Biolabs offers high-quality CLN3 proteins through optimized heterologous expression systems, including full-length multi-pass wild-type and channel-defective mutant variants with modified transmembrane helix topology. These products retain native lipid efflux pore activity, suitable for lysosomal lipid metabolism research and anti-lipofuscin neuroprotective compound screening workflows. All CLN3 batches undergo strict quality control to ensure consistent performance and reliable application across neuronal research platforms.

CLN3 Membrane Protein Product

Not finding the membrane protein product you need? Contact us to start your one-stop custom service!

CLN3 Stable Cell Line Product

Creative Biolabs provides custom-engineered CLN3 stable cell lines, including wild-type and disease mutant neuronal research models. These cell lines are optimized for lysosomal lipid efflux mechanistic investigation and Batten disease therapeutic compound potency testing. Each cell line undergoes stringent validation to ensure stable transmembrane protein expression profiles and consistent lipid clearance functional performance in diverse experimental contexts.

CLN3 Stable Cell Line Product

Not finding the stable cell line product you need? Contact us to start your one-stop custom service!

CLN3 Recombinant Antibody Product

High-specificity recombinant antibodies targeting CLN3 are developed via advanced antibody engineering technologies, with no cross-reactivity to other CLN family lysosomal transporters. These antibodies are validated for multiple applications, including neuronal lysosome immunofluorescence localization detection, Western blot expression quantification and co-immunoprecipitation analysis of CLN3 lipid channel complexes, enabling precise characterization of CLN3 expression levels and lysosomal membrane distribution under healthy and disease-mutant cellular conditions.

CLN3 Recombinant Antibody Product

Not finding the recombinant antibody product you need? Contact us to start your one-stop custom service!

Product Features

  • Native Lipid Efflux Channel Activity: Preserves intact multi-transmembrane pore structure to faithfully recapitulate lysosomal lipopigment clearance cascades.
  • CLN Isoform Specificity: Validated for selective binding to CLN3 epitopes without cross-reaction to CLN1/CLN5, supporting high-specificity neurolysosomal research.
  • Neurodegeneration Compatibility: Optimized for primary neuronal experimental systems, providing reliable tools for Batten disease therapeutic drug discovery.
  • Comprehensive Customization Support: Enables end-to-end development of tailored CLN3 proteins, antibodies, and lipid clearance reporter cell lines to meet diversified lysosomal neurodegeneration research demands.

Custom CLN3 Research Services

Beyond catalog products, Creative Biolabs offers specialized custom services for CLN3 research:

  • Custom CLN3 Protein Production: Tailored expression of channel-defective disease mutants, epitope-tagged full-length constructs and lipid substrate fusion variants.
  • Custom Antibody Development: Generation of CLN3-specific antibodies for neuronal lysosome labeling and channel complex detection, as well as lipid efflux blocking antibody preparation.
  • Stable Cell Line Engineering: Custom construction of CLN3 wild-type/mutant lipid metabolism reporter cell lines with complete lipopigment clearance functional validation.
  • Functional Assay Development: Design of lysosomal lipid efflux activity assays and high-throughput neuroprotective compound screening workflows.

Frequently Asked Questions (FAQ)

  1. What is the primary function of CLN3?

    CLN3 is an endolysosomal lipid efflux channel protein that exports lipopigment precursors out of lysosomes, fine-tunes neuronal lipid waste clearance dynamics, and prevents toxic intralysosomal aggregate buildup.

  2. Why is CLN3 a significant research target?

    CLN3 pathogenic mutations are the leading cause of juvenile Batten neurodegenerative storage disease. It is a critical core research target for lysosomal lipid and pediatric neurobiology.

  3. Are Creative Biolabs' CLN3 products suitable for clinical use?

    No, all CLN3 products and services are strictly for research use only, not intended for clinical diagnosis or treatment.

  4. What types of CLN3 products does Creative Biolabs offer?

    Offerings include full-length multi-pass CLN3 proteins, high-specificity recombinant antibodies, and custom lipid clearance reporter neuronal cell lines, supporting Batten disease research projects.

  5. How are CLN3 proteins validated for activity?

    CLN3 proteins are validated via lysosomal lipid efflux cell-based assays to retain native lipopigment clearance regulatory function.

Reference
  1. Shematorova, Elena K., and George V. Shpakovski. "Current insights in elucidation of possible molecular mechanisms of the juvenile form of Batten disease." International journal of molecular sciences 21.21 (2020): 8055. Under Open Access license CC BY 4.0, without modification. https://doi.org/10.3390/ijms21218055
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