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Mass Cytometry based Immune Cell & Blood Cell Interaction Analysis Service

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Background

As immune effector cell (IEC) therapies continue to evolve, characterizing the downstream impact of these powerful agents on hematopoietic integrity has become a central concern in next-generation safety assessment strategies. Traditional assays often fall short in capturing the full complexity of immune–hematopoietic interactions, which involve diverse signaling axes, lineage-specific perturbations, and dynamic microenvironmental responses.

Mass cytometry (CyTOF) stands at the forefront of high-dimensional single-cell analysis. By integrating flow cytometry with mass spectrometry, this technology enables simultaneous quantification of 40+ cellular parameters without signal overlap, allowing for unprecedented resolution of immune and hematopoietic phenotypes. At Creative Biolabs, our Mass Cytometry based Immune Cell and Blood Cell Interaction Analysis Service provides a platform to dissect the multiplexed, non-redundant biological processes underlying immune cell–induced hematopoietic suppression or modulation.

Fig.1 The subsets of leukocytes. (OA Literature)Fig.1 The subsets of leukocytes and their surface markers used to identify them.1

This service is a core component of our Immune Effector Cell-associated Hematotoxicity (ICAHT) Management Solutions, offering researchers actionable insights into lineage-specific vulnerability, progenitor status, cell state transitions, and functional remodeling in response to engineered immune effectors.

Service Overview

Creative Biolabs' CyTOF-based platform is designed to map the immunophenotypic and functional profiles of both IECs and hematopoietic cells post co-culture or ex vivo exposure. Using meticulously designed metal-tagged antibody panels, we interrogate critical cell surface and intracellular markers associated with:

  • Early and late hematopoietic lineages (HSPC, myeloid, erythroid, lymphoid)
  • Immune effector cell activation states
  • Proliferation, exhaustion, and metabolic stress
  • Cytokine signaling responsiveness
  • Apoptosis and survival pathways

Unlike conventional flow cytometry, mass cytometry eliminates spectral overlap, enabling deeper multiplexing with improved signal fidelity. Our panels are modular and customizable, allowing tailored profiling to specific CAR constructs, targets, or hematopoietic populations of interest.

This service supports both discovery-phase research and comparative construct analysis, offering a scalable solution to understand hematopoietic risks and inform upstream design choices.

Core Capabilities

40+ Marker Simultaneous Detection

Identify lineage, activation, suppression, and metabolic status in one unified assay.

Custom Panel Development

Build targeted marker panels for your specific IEC and hematopoietic model.

High-Dimensional Clustering & Annotation

Apply advanced unsupervised and supervised algorithms for cell state discovery and interaction signature profiling.

Lineage-Specific Sensitivity Analysis

Quantify selective impact of IECs on progenitor subsets or committed precursors.

Batch-Controlled Multiplexing

Run multiple constructs or donors simultaneously for robust, normalized comparisons.

Cross-Platform Integration

Correlate CyTOF data with co-culture or imaging datasets for multidimensional insight.

Workflow

Fig.2 Workflow of this service. (Creative Biolabs Original)

Highlights

Mechanism-Informed Profiling

CyTOF reveals subtle phenotypic changes and functional shifts undetectable by standard assays.

Single-Cell Resolution

Avoids signal averaging and highlights heterogeneity within hematopoietic populations.

Quantitative Cell Frequency Tracking

Track expansion, depletion, or resilience of rare subpopulations such as MEPs or GMPs.

Multi-Construct Comparison

Evaluate immune construct variants in parallel to inform lead candidate selection.

Rapid Panel Deployment

Choose from validated pre-built panels or rapidly prototype new ones with our scientific team.

FAQs

Q1: How is this service different from conventional flow cytometry analysis?

A1: CyTOF allows simultaneous analysis of over 40 markers without spectral overlap, enabling far richer phenotypic and functional resolution at the single-cell level.

Q2: Can I use my own antibody clones or panel designs?

A2: Yes. We support client-supplied antibodies and assist with conjugation to rare earth metal isotopes when needed.

Q3: Is mass cytometry applicable for both fresh and frozen samples?

A3: Yes, we can process either fresh or cryopreserved samples with appropriate optimization for viability and staining fidelity.

Contact Us

Creative Biolabs is committed to advancing safe, precise, and mechanism-driven immune effector cell development. Our Mass Cytometry based Immune Cell and Blood Cell Interaction Analysis Service provides deep phenotypic and functional insights into how engineered immune cells interact with hematopoietic targets—accelerating design decisions and reducing downstream toxicity risks.

Let's co-engineer next-gen immune therapies with confidence. Reach out today to explore a collaborative solution built for discovery and safety.

Reference

  1. Arlt, Elise et al. "A Flow Cytometry-Based Examination of the Mouse White Blood Cell Differential in the Context of Age and Sex." Cells vol. 13,18 1583. DOI: 10.3390/cells13181583. Distributed under Open Access License CC BY 4.0, without modification.
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